Tres Cafes, tres districts.

Caffé del Sole in the Inner Richmond serves Sicilian based roaster Miscela D'oro.
The only other places I've seen this coffee is mostly in North Beach and in West Portal. /California near 6th

Piccino in the Dogpatch district recently opened up a bit more space for dining and moved their coffee bar
a stone-throw away, serving Blue Bottle goodiness on the go, or to have with your pizzetta. /22nd and Tennesse

The Chestnut Bakery in the Marina has the cutest little cakes, but I'm all for the coffee.
They serve Mr.Espresso coffee /Chestnut near Divisadero